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Thursday, August 25, 2011

Steve Jobs Announces Resignation From Apple

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Apple’s founder Steve Jobs resigned as CEO on Wednesday after taking most the year off for medical reasons.
The 55-year-old co-founder of the company is a pancreatic cancer survivor and has been on medical leave since January 17.
Apple said Jobs has been elected chairman and Tim Cook has been elected CEO.
“Steve’s extraordinary vision and leadership saved Apple and guided it to its position as the world’s most innovative and valuable technology company,” Art Levinson, Chairman of Genentech, on behalf of Apple’s Board said in a statement.
“Steve has made countless contributions to Apple’s success, and he has attracted and inspired Apple’s immensely creative employees and world class executive team. In his new role as Chairman of the Board, Steve will continue to serve Apple with his unique insights, creativity and inspiration.”
“The Board has complete confidence that Tim is the right person to be our next CEO,” added Levinson. “Tim’s 13 years of service to Apple have been marked by outstanding performance, and he has demonstrated remarkable talent and sound judgment in everything he does.”
Cook has been acting as CEO since Jobs has been absent on medical leave. 

First Genetic Evidence Of Long-Lived African Presence Within Britain

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New research has identified the first genetic evidence of Africans having lived amongst "indigenous" British people for centuries. Their descendants, living across the UK today, were unaware of their black ancestry.



The University of Leicester study, funded by the Wellcome Trust and published today in the journal European Journal of Human Genetics, found that one third of men with a rare Yorkshire surname carry a rare Y chromosome type previously found only amongst people of West African origin.
The researchers, led by Professor Mark Jobling, of the Department of Genetics at the University of Leicester, first spotted the rare Y chromosome type, known as hgA1, in one individual, Mr. X. This happened whilst PhD student Ms. Turi King was sampling a larger group in a study to explore the association between surnames and the Y chromosome, both inherited from father to son. Mr. X, a white Caucasian living in Leicester, was unaware of having any African ancestors.
"As you can imagine, we were pretty amazed to find this result in someone unaware of having any African roots," explains Professor Jobling, a Wellcome Trust Senior Research Fellow. "The Y chromosome is passed down from father to son, so this suggested that Mr. X must have had African ancestry somewhere down the line. Our study suggests that this must have happened some time ago."
Although most of Britain's one million people who define themselves as "Black or Black British" owe their origins to immigration from the Caribbean and Africa from the mid-twentieth century onwards, in reality, there has been a long history of contact with Africa. Africans were first recorded in the north 1800 years ago, as Roman soldiers defending Hadrian's Wall.
To investigate the origins of hgA1 in Britain, the team recruited and studied a further eighteen males with the same surname as Mr. X. All but one were from the UK, with paternal parents and grandparents also born in Britain. Six, including one male in the US whose ancestors had migrated from England in 1894, were found to have the hgA1 chromosome.
Further genealogical research to identify a common ancestor for all seven X-surnamed males suggests that the hgA1 Y chromosome must have entered their lineage over 250 years ago. However, it is unclear whether the male ancestor was a first generation African immigrant or a European man carrying an African Y chromosome introduced into Britain some time earlier, or even whether the hgA1 Y chromosome goes back as far as the Roman occupation.
"This study shows that what it means to be British is complicated and always has been," says Professor Jobling. "Human migration history is clearly very complex, particularly for an island nation such as ours, and this study further debunks the idea that there are simple and distinct populations or 'races'."
In addition, Professor Jobling believes that the research may have implications for DNA profiling in criminal investigations.
"Forensic scientists use DNA analysis to predict a person's ethnic origins, for example from hair or blood samples found at a crime scene. Whilst they are very likely to predict the correct ethnicity by using wider analysis of DNA other than the Y chromosome, finding this remarkable African chromosome would certainly have them scratching their heads for a while."

Gene Study Sheds New Light On Origins of British Men

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New genetic evidence reveals that most British men are not descended from immigrant farmers who migrated east 5,000-10,000 years ago -- contrary to previous research.

Instead, scientists from the Universities of Oxford and Edinburgh say that most European men can trace their lineage to people -- most likely hunter-gatherers -- who had settled in Europe long before that time.
The latest study, based on the most common genetic lineage in European males, aims to correct an analysis of genetic data, published last year. It had reported that most British men came from people who migrated west, with the spread of agriculture, from the Near East.
More than 100 million European men have a set of genes called R-M269, including about three-quarters of British men. A key question in understanding the peopling of Europe is when this group spread out across Europe.
Researchers say their work shows that the set of genes chosen to estimate the age of this group of men vary the outcome enormously. They add that the previously reported east-west pattern is not found in their larger and more comprehensive dataset. This, the Oxford-Edinburgh team says, leaves little evidence for a farmer-led dispersal of this major group.
According to Dr Cristian Capelli, the Oxford geneticist who led the research, the study "resets" the debate on the peopling of Europe. He says, "Our works overturns the recent claims of European Y chromosomes being brought into the continent by farmers."
Co-author, Dr Jim Wilson of the University of Edinburgh's Centre for Population Health Sciences, adds that the paper shows for the first time that certain properties of the genes studied strongly influence the accuracy of the date estimate.
"Estimating a date at which an ancestral lineage originated is an interesting application of genetics, but unfortunately it is beset with difficulties and it is very difficult to provide good dates. Many people assume that the more genes the more accurate the dates, but this is not the case: some genetic markers are more suited to dating than others."
The study also reports multiple subgroups of the R-M269 group that are very common in different parts of Europe, consistent with expansion of these different groups in each place.
The study is published online in the Proceedings of the Royal Society B: Biological Sciences

Wednesday, August 24, 2011

500 years ago, yeast's epic journey gave rise to lager beer

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In the 15th century, when Europeans first began moving people and goods across the Atlantic, a microscopic stowaway somehow made its way to the caves and monasteries of Bavaria. The stowaway, a yeast that may have been transported from a distant shore on a piece of wood or in the stomach of a fruit fly, was destined for great things. In the dank caves and monastery cellars where 15th century brewmeisters stored their product, the newly arrived yeast fused with a distant relative, the domesticated yeast used for millennia to make leavened bread and ferment wine and ale. The resulting hybrid -- representing a marriage of species as evolutionarily separated as humans and chickens -- would give us lager, the clear, cold-fermented beer first brewed by 15th century Bavarians and that today is among the most popular -- if not the most popular -- alcoholic beverage in the world.
And while scientists and brewers have long known that the yeast that gives beer the capacity to ferment at cold temperatures was a hybrid, only one player was known: Saccharomyces cerevisiae, the yeast used to make leavened bread and ferment wine and ale. Its partner, which conferred on beer the ability to ferment in the cold, remained a puzzle, as scientists were unable to find it among the 1,000 or so species of yeast known to science.
Now, an international team of researchers believes it has identified the wild yeast that, in the age of sail, apparently traveled more than 7,000 miles to those Bavarian caves to make a fortuitous microbial match that today underpins the $250 billion a year lager beer industry.
Writing in the Proceedings of the National Academy of Sciences, researchers from Portugal, Argentina and the United States describe the discovery of a wild yeast in the beech forests of Patagonia, the alpine region at the tip of South America, that apparently solves the age-old mystery of the origin of the yeast that made cold-temperature fermentation and lager beer possible.
"People have been hunting for this thing for decades," explains Chris Todd Hittinger, a University of Wisconsin-Madison genetics professor and a co-author of the new study. "And now we've found it. It is clearly the missing species. The only thing we can't say is if it also exists elsewhere (in the wild) and hasn't been found."
The newfound yeast, dubbed Saccharomyces eubayanus, was discovered as part of an exhaustive global search, led by the New University of Lisbon's José Paulo Sampaio and Paula Gonçalves. Aimed squarely at resolving the lager yeast mystery, the Portuguese team sorted through European yeast collections, combed the scientific literature and gathered new yeasts from European environments. Their efforts yielded no candidate species of European origin.
Expanding the search to other parts of the world, however, finally paid dividends when collaborator Diego Libkind of the Institute for Biodiversity and Environment Research (CONICET) in Bariloche, Argentina, found in galls that infect beech trees a candidate species whose genetic material seemed to be a close match to the missing half of the lager yeast.
"Beech galls are very rich in simple sugars. It's a sugar rich habitat that yeast seem to love," notes Hittinger.
The yeast is so active in the galls, according to Libkind, that they spontaneously ferment. "When overmature, they fall all together to the (forest) floor where they often form a thick carpet that has an intense ethanol odor, most probably due to the hard work of our new Saccharomyces eubayanus."
The new yeast was hustled off to the University of Colorado School of Medicine, where a team that included Hittinger, Jim Dover and Mark Johnston sequenced its genome. "It proved to be distinct from every known wild species of yeast, but was 99.5 percent identical to the non-ale yeast portion of the lager genome," says Hittinger, now an assistant professor of genetics at UW-Madison.
The Colorado team also identified genetic mutations in the lager yeast hybrid distinctive from the genome of the wild lager yeast. Those changes -- taking place in a brewing environment where evolution can be amped up by the abundance of yeast -- accumulated since those first immigrant yeasts melded with their ale cousins 500 years ago and have refined the lager yeast's ability to metabolize sugar and malt and to produce sulfites, transforming an organism that evolved on beech trees into a lean, mean beer-making machine.
"Our discovery suggests that hybridization instantaneously formed an imperfect 'proto-lager' yeast that was more cold-tolerant than ale yeast and ideal for the cool Bavarian lagering process," Hittinger avers. "After adding some new variation for brewers to exploit, its sugar metabolism probably became more like ale yeast and better at producing beer."

Consuming cholesterol-lowering foods results in greater decrease in LDL than low-saturated-fat diet

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Persons with high cholesterol who received counseling regarding a diet that combined cholesterol-lowering foods such as soy protein, nuts and plant sterols over 6 months experienced a greater reduction in their low-density lipoprotein cholesterol (LDL-C) levels than individuals who received advice on a low-saturated fat diet, according to a study in the August 24/31 issue of JAMA. Efforts have been made to improve the ability of conventional dietary therapy to reduce serum cholesterol through the inclusion of specific foods or food components with known cholesterol-lowering properties, singly or in combination (dietary portfolio), according to background information in the article. The long-term effect of such diets compared with conventional dietary advice has not previously been assessed.
David J. A. Jenkins, M.D., of St. Michael's Hospital and the University of Toronto, and colleagues conducted a multi-center trial to determine whether advice to eat a dietary portfolio consisting of foods recognized by the U.S. Food and Drug Administration as associated with lowering serum cholesterol achieved significantly greater percentage decreases in LDL-C levels compared with a control diet at 6-month follow-up. The control diet emphasized high fiber and whole grains but lacked components of the portfolio diet, which emphasized dietary incorporation of plant sterols, soy protein, viscous fibers, and nuts. The study included 351 participants with hyperlipidemia from 4 participating academic centers across Canada (Quebec City, Toronto, Winnipeg, and Vancouver) randomized between June 2007 and February 2009 to 1 of 3 treatments.
Participants received dietary advice for 6 months on either the low-saturated fat therapeutic diet (control) or a routine or intensive dietary portfolio, for which counseling was delivered at different frequencies. Routine dietary portfolio involved 2 clinic visits over 6 months and intensive dietary portfolio involved 7 clinic visits over 6 months.
In the modified intention-to-treat analysis of 345 participants, the overall attrition rate was not significantly different between treatments (18 percent for intensive dietary portfolio, 23 percent for routine dietary portfolio, and 26 percent for control).
The researchers found that the change in LDL-C levels from the beginning of the study to week 24 in the control diet were -3.0 percent or -8 mg/dL. In the routine and intensive dietary portfolio interventions, the respective percentage changes were -13.1 percent or -24 mg/dL and -13.8 percent or -26 mg/dL for LDL-C levels.
"Percentage LDL-C reductions for each dietary portfolio were significantly more than the control diet. The 2 dietary portfolio interventions did not differ significantly. Among participants randomized to one of the dietary portfolio interventions, percentage reduction in LDL-C on the dietary portfolio was associated with dietary adherence," the authors write.
"In conclusion, this study indicated the potential value of using recognized cholesterol-lowering foods in combination. We believe this approach has clinical application. A meaningful 13 percent LDL-C reduction can be obtained after only 2 clinic visits of approximately 60-and 40-minute sessions. The limited 3 percent LDL-C reduction observed in the conventional diet is likely to reflect the adequacy of the baseline diet and therefore suggests that larger absolute reductions in LDL-C may be observed when the dietary portfolio is prescribed to patients with diets more reflective of the general population," the authors write.